Brassica plants with modified seed oil composition

Patent metadata

Field	Value
Publication number	US-10494642-B2
Application number	US-201615570153-A
Country	US
Kind code	B2
Filing date	Apr 28, 2016
Priority date	Apr 28, 2015
Publication date	Dec 3, 2019
Grant date	Dec 3, 2019

Abstract

The present invention relates to Brassica plants comprising mutant FAD2 genes, FAD2 nucleic acid sequences and proteins, as well as methods for generating and identifying said plants and alleles, which can be used to plants with increased levels of C18:1 in the seed oil. The invention further relates to combining the mutant FAD2 alleles with mutant FAD3 alleles to increase the levels of C18:1 and reduce the levels of C18:3 in the seed oil.

First claim

The invention claimed is:

1. A Brassica napus plant, cell, seed or progeny of said plant, comprising a BnFAD2-A1, a BnFAD2-A2, a BnFAD2-C1 and a BnFAD2-C2 gene, wherein said plant comprises knock-out fad2 alleles of the BnFAD2-A1 and of the BnFAD2-C2 genes, and wherein the fad2 alleles of said BnFAD2-C1 gene encode a functional BnFAD2-C1 protein.

2. The Brassica napus plant, cell, seed or progeny of said plant, according to claim 1 , wherein the fad2 alleles of said BnFAD2-C1 gene are wild-type alleles.

3. The Brassica napus plant, cell, seed or progeny of said plant, according to claim 2 , wherein the fad2 alleles of the BnFAD2-A2 gene are knock-out fad2 alleles.

4. The Brassica napus plant, cell, seed or progeny of said plant, according to claim 1 , wherein said knock-out fad2 allele of said BnFAD2-A1 gene is a fad2 allele encoding a protein in which the His at position 109 of SEQ ID NO: 6 is substituted with another amino acid, and wherein said knock-out fad2 allele of said BnFAD2-C2 allele is a fad2 allele comprising a stop codon mutation in the codon encoding the Trp at position 190 of SEQ ID NO: 15.

5. The Brassica napus plant, cell, seed or progeny of said plant, according to claim 4 , which is derived or obtained from:
a. seed comprising HIOL101 having been deposited at NCIMB under accession number NCIMB 42376; and
b. seed comprising HIOL109 having been deposited at NCIMB under accession number NCIMB 42375.

6. The Brassica napus plant, cell, seed or progeny of said plant, according to claim 1 which is homozygous for any one of the knock-out fad2 alleles.

7. The Brassica napus plant, cell, seed or progeny of said plant, according to claim 1 , said plant further comprising at least a knock-out fad3 allele of at least one Brassica napus FAD3 gene.

8. The Brassica napus plant, cell, seed or progeny of said plant, according to claim 7 , said plant further comprising knock-out fad3 alleles of Brassica napus FAD3 genes FAD3-A1, FAD3-A2, FAD3-A3, FAD3-C1 and FAD3-C2.

9. The Brassica napus plant, cell, seed or progeny of said plant, according to claim 7 , wherein said at least one Brassica napus FAD3 gene is:
a. a FAD3-A1 gene comprising a sequence having at least 90% sequence identity to the sequence of SEQ ID NO: 37, or having a cDNA sequence having at least 90% sequence identity to the sequence of SEQ ID NO: 39, or encoding a protein having at least 90% sequence identity to the sequence of SEQ ID NO: 38;
b. a FAD3-A2 gene comprising a sequence having at least 90% sequence identity to the sequence of SEQ ID NO: 40, or having a cDNA sequence having at least 90% sequence identity to the sequence of SEQ ID NO: 42, or encoding a protein having at least 90% sequence identity to the sequence of SEQ ID NO: 41;
c. a FAD3-A3 gene comprising a sequence having at least 90% sequence identity to the sequence of SEQ ID NO: 43, or having a cDNA sequence having at least 90% sequence identity to the sequence of SEQ ID NO: 45, or encoding a protein having at least 90% sequence identity to the sequence of SEQ ID NO: 44;
d. a FAD3-C1 gene comprising a sequence having at least 90% sequence identity to the sequence of SEQ ID NO: 46, or having a cDNA sequence having at least 90% sequence identity to the sequence of SEQ ID NO: 48, or encoding a protein having at least 90% sequence identity to the sequence of SEQ ID NO: 47; or
e. a FAD3-C2 gene comprising a sequence having at least 90% sequence identity to the sequence of SEQ ID NO: 49, or having a cDNA sequence having at least 90% sequence identity to the sequence of SEQ ID NO: 51, or encoding a protein having at least 90% sequence identity to the sequence of SEQ ID NO: 50.

10. The Brassica napus plant, cell, seed or progeny of said plant, according to claim 1 , which has increased levels of C18:1 in the seed oil and which maintains normal agronomic development when compared to a control plant.

11. The Brassica napus plant, cell, seed or progeny of said plant, according to claim 7 , which has increased levels of C18:1 and decreased levels of C18:3 in the seed oil when compared to a control plant.

12. A method for increasing the levels of C18:1 in seed oil while maintaining normal agronomic development, said method comprising introducing a knock-out fad2 allele of a BnFAD2-A1 gene and a knock-out fad2 allele of a BnFAD2-C2 gene into a Brassica napus plant, and selecting a Brassica napus plant comprising said knock-out fad2 allele of said BnFAD2-A1 gene, and said knock-out fad2 allele of said BnFAD2-C2 gene, and wherein said plant further contains a BnFAD2-C1 gene of which the fad2 alleles of said BnFAD2-C1 gene encode a functional BnFAD2-C1 protein, thereby increasing the levels of C18:1 in seed oil while maintaining normal agronomic development in a Brassica napus plant when compared to a control plant.

13. The method according to claim 12 for increasing the levels of C18:1 and decreasing the levels of C18:3 in seed oil while maintaining normal agronomic development, said method further comprising introducing a knock-out fad3 allele of a FAD3-A1 gene, a knock-out fad3 allele of a FAD3-A2 gene, a knock-out fad3 allele of a FAD3-A3 gene, a knock-out fad3 allele of a FAD3-C1 gene, and a knock-out fad3 allele of a FAD3-C2 gene, into a Brassica napus plant, and selecting a Brassica napus plant comprising said knock-out fad3 allele of said FAD3-A1 gene, said knock-out fad3 allele of said FAD3-A2 gene, said knock-out fad3 allele of said FAD3-A3 gene, said knock-out fad3 allele of said FAD3-C1 gene, and said knock-out fad3 allele of said FAD3-C2 gene, thereby increasing the levels of C18:1 and decreasing the levels of C18:3 in seed oil while maintaining normal agronomic development in a Brassica napus plant when compared to a control plant.

14. A method for producing oil, comprising harvesting the seed according to claim 1 and extracting the oil from said seed.

15. A method of producing food, feed, or an industrial product comprising preparing the food, feed or industrial product from the plant, cell, seed or progeny of said plant according to claim 1 .

16. A method to produce a Brassica napus plant comprising an increased level of C18:1 in the seed oil and which maintains normal agronomic development compared to a control plant, said method comprising sowing seeds according to claim 1 and growing plants from said seeds.

Assignees

• Bayer Cropscience Nv
• BASF Agricultural Solutions Seed US LLC

Inventors

• Denolf Peter
• Laga Benjamin

Classifications

• C07K14/415 Primary

  from plants · CPC title

• C12N15/8261 Primary

  with agronomic (input) traits, e.g. crop yield · CPC title

• C12Y114/19006

  DELTA12-fatty-acid desaturase (1.14.19.6), i.e. oleoyl-CoA DELTA12 desaturase · CPC title

• C12N15/8247

  involving modified lipid metabolism, e.g. seed oil composition · CPC title

• A01H6/202

  Brassica napus [canola] · CPC title