Methods and compositions for treating cancer using peptide nucleic acid-based agents

Patent metadata

Field	Value
Publication number	US-10113169-B2
Application number	US-201415104701-A
Country	US
Kind code	B2
Filing date	Dec 17, 2014
Priority date	Dec 23, 2013
Publication date	Oct 30, 2018
Grant date	Oct 30, 2018

Abstract

The present invention provides compositions and methods for treating cancer with peptide nucleic acid agents. In some embodiments, the present invention provides methods and compositions relating to peptide nucleic acid agents that target oncogenes. For example, the present invention provides compositions, including pharmaceutical compositions, comprising agents specific for BRAF V600E inhibition, or fragments or characteristic portions thereof. The present invention further provides various therapeutic and/or diagnostic methods of using BRAF V600E specific peptide nucleic acid agents and/or compositions.

First claim

What is claimed is:

1. A PNA agent comprising:
a PNA moiety; and
a first cationic and hydrophobic peptide at the N-terminus of the PNA moiety, wherein the first peptide comprises lysine residues, and at least one of the lysine residues comprises a palmitoyl side chain moiety; and
a second cationic and hydrophobic peptide at the C-terminus of the PNA moiety, wherein the second peptide comprises lysine residues, and at least one of the lysine residues comprises a palmitoyl side chain moiety.

2. The PNA agent of claim 1 , wherein the first peptide and/or the second peptide consists of lysine residues.

3. The PNA agent of claim 1 , wherein the PNA agent has a sequence that has minimal propensity to form hairpin loops.

4. The PNA agent of claim 1 , wherein the PNA agent has a sequence that contains less than 60% purines.

5. The PNA agent of claim 1 , wherein the PNA moiety has a sequence that targets a gene.

6. The PNA agent of claim 1 wherein the PNA moiety has a sequence that targets a 13-20 nucleotide sequence of a gene with 75% or greater complementarity.

7. The PNA agent of claim 1 wherein the PNA moiety has a sequence that targets a 13-20 nucleotide sequence of a gene with complete complementarity.

8. The PNA agent of claim 5 , wherein the gene is an oncogene.

9. The PNA agent of claim 8 , wherein the oncogene includes a mutant sequence element and the PNA agent has a sequence that targets a site comprising or consisting of the mutant sequence element.

10. The PNA agent of claim 9 , wherein the PNA agent targets a site comprising or consisting of:
(i) a region of a BRAF oncogene comprising a mutation corresponding to a V600E mutation in a BRAF protein; or
(ii) a region of a Gnaq gene comprising a mutation corresponding to a Q209L mutation in a Gnaq protein.

11. The PNA agent of claim 8 , wherein the PNA agent targets a site comprising or consisting of a region comprising a translocation junction of an oncogene.

12. The PNA agent of claim 11 , wherein the PNA agent targets a site comprising or consisting of a region of:
(i) a MYB-NFIB translocation comprising a junction of MYB and NFIB genes or fragments thereof; or
(ii) a FUS-CHOP translocation comprising a junction of FUS and CHOP genes or fragments thereof.

13. A pharmaceutical composition comprising the PNA agent of any of claims 1 , 2 , 3 , 4 , 5 - 7 , 8 - 10 , 11 , and 12 and pharmaceutically acceptable carrier.

Assignees

• Memorial Sloan Kettering Cancer Center

Inventors

• Rothman Jeffrey H
• Schwartz Gary K

Classifications

• A61P35/00

  Antineoplastic agents · CPC title

• A61P43/00

  Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00 · CPC title

• G01N33/57575

  involving oncogenic proteins · CPC title

• C12N2310/3513

  Protein; Peptide · CPC title

• G01N2500/10

  involving cells · CPC title