Mutant transaminases as well as methods and uses relating thereto

Patent metadata

Field	Value
Publication number	US-10017749-B2
Application number	US-201615130030-A
Country	US
Kind code	B2
Filing date	Apr 15, 2016
Priority date	Apr 16, 2015
Publication date	Jul 10, 2018
Grant date	Jul 10, 2018

Abstract

The present invention relates to a mutant transaminase with increased transaminase activity relative to the wild-type transaminase, a fusion protein comprising the transaminase, a polynucleotide coding for the transaminase, a host cell comprising the polynucleotide, mutant transaminase and/or fusion protein, a method of producing an amine with the mutant transaminase or fusion protein and the use of the mutant transaminase or fusion protein for the production of an amine.

First claim

The invention claimed is:

1. A mutant transaminase with increased transaminase activity relative to the wild-type transaminase having the amino acid sequence shown in SEQ ID NO:1, wherein the mutant transaminase comprises an amino acid sequence that is at least 65% identical to the amino acid sequence of SEQ ID NO: 1 ( Ruegeria sp. TM1040 transaminase; referred to as 3FCR) and wherein the mutant transaminase has at least two amino acid substitutions relative to the wild-type transaminase having the amino acid sequence of SEQ ID NO:1, wherein the amino acid at the position corresponding to position 59 of SEQ ID NO: 1 is substituted with Trp or Phe (Trp59 or Phe59, respectively) and the amino acid at the position corresponding to position 231 of SEQ ID NO: 1 is substituted with Ala or Gly (Ala231 or Gly231, respectively).

2. The mutant transaminase of claim 1 , wherein said mutant transaminase has at least one substitution selected from the group consisting of:
(a) the amino acid at the position corresponding to position 87 of SEQ ID NO: 1 is substituted with a hydrophobic amino acid (HYaa87) selected from the group consisting of Leu (Leu87), Val (Val87), and Phe (Phe87);
(b) the amino acid at the position corresponding to position 152 of SEQ ID NO: 1 is substituted with Phe (Phe152);
(c) the amino acid at the position corresponding to position 234 of SEQ ID NO: 1 is substituted with Phe (Phe234) or Met (Met234); and
(d) wherein the amino acid at the position corresponding to position 423 of SEQ ID NO: 1 is substituted with His (His423).

3. The mutant transaminase of claim 1 , wherein the transaminase has one or more mutations selected from the group consisting of:
(a) Trp59 and Ala231;
(b) Trp59, Phe87 and Ala231;
(c) Trp59, Leu87 and Ala231;
(d) Trp59, Val87 and Ala231;
(e) Trp59, Phe87, Ala231 and His423;
(f) Trp59, Phe87, Phe152 and Ala231;
(g) Trp59, Leu87, Phe152 and Ala231;
(h) Trp59, Val87, Phe152 and Ala231;
(i) Trp59, Phe87, Phe152, Ala231 and His423;
(j) Trp59 and Gly231;
(k) Trp59, Phe87 and Gly231;
(l) Trp59, Leu87 and Gly231;
(m) Trp59, Val87 and Gly231;
(n) Trp59, Phe87, Phe152 and Gly231;
(o) Trp59, Phe87, Phe152, Gly231 and His423;
(p) Phe59 and Ala231;
(q) Phe59, Phe87 and Gly231;
(r) Trp59, Ala231 and Phe234;
(s) Trp59, Ala231 and Met234;
(t) Trp59, Phe87, Ala231 and Phe234;
(u) Trp59, Leu87, Ala231 and Phe234;
(v) Trp59, Val87, Ala231 and Phe234;
(w) Trp59, Phe87, Phe152, Ala231 and Phe234;
(x) Trp59, Phe87, Phe152, Ala231, Phe234 and His423;
(y) Trp59, Gly231 and Phe234;
(z) Trp59, Phe87, Gly231 and Phe234;
(aa) Trp59, Leu87, Gly231 and Phe234;
(bb) Trp59, Val87, Gly231 and Phe234;
(cc) Trp59, Phe87, Phe152, Gly231 and Phe234;
(dd) Trp59, Phe87, Phe152, Gly231, Phe234 and His423;
(ee) Phe59, Phe87, Gly231 and Phe234;
(ff) Trp59, Ala231 and Met234;
(gg) Trp59, Phe87, Ala231 and Met234;
(hh) Trp59, Leu87, Ala231 and Met234;
(ii) Trp59, Val87, Ala231 and Met234;
(jj) Trp59, Phe87, Phe152, Ala231 and Met234;
(kk) Trp59, Phe87, Phe152, Ala231, Met234 and His423;
(ll) Trp59, Gly231 and Met234;
(mm) Trp59, Phe87, Gly231 and Met234;
(nn) Trp59, Leu87, Gly231 and Met234;
(oo) Trp59, Val87, Gly231 and Met234;
(pp) Trp59, Phe87, Phe152, Gly231 and Met234;
(qq) Trp59, Phe87, Phe152, Gly231, Met234 and His423; and
(rr) Phe59, Phe87, Gly231 and Met234.

4. The mutant transaminase of claim 1 wherein the transaminase has at least one set of mutations selected from the group consisting of:
(a) Trp59, Phe87, Phe152 and Ala231;
(b) Trp59, Phe87, Phe152, Ala231 and Met234;
(c) Trp59, Phe87, Phe152, Ala231 and H423; and
(d) Phe59, Phe87 and Gly231.

5. The mutant transaminase of claim 1 , wherein the transaminase comprises a sequence selected from the group consisting of SEQ ID NOs: 30-38, SEQ ID NOS:43, 44, 46-51, SEQ ID NO:53, SEQ ID NO:55 and SEQ ID NOS:57-64.

6. The mutant transaminase of claim 1 , wherein the mutant transaminase comprises an amino acid sequence that is at least 70%, identical to an amino acid sequence selected from the group consisting of: SEQ ID NOs: 1, 3, and 5-11.

7. The mutant transaminase of claim 1 , wherein the mutant transaminase has increased transaminase activity for transamination of at least one compound selected from the group consisting of: 1-(4-chlorophenyl)-1-phenyl-1-aminomethane (1a); 2,2-dimethyl-1-phenyl-1-amino propane (2a); 1,3-diphenyl-1-aminopropane (3a); 1,2-dihydroacenaphthylen-1-amine (4a); 3-amino-8-benzoyl-8-azabicyclo[3.2.1]octane (5a); 3(4-chlorophenyl)-phenyl-methanone (1b); 2,2-dimethyl-1-phenyl-propan-1-one (2b) 1,3-diphenylpropan-1-one (3b); 2H-acenaphthylen-1-one (4b), 8-benzoyl-8-azabicyclo[3.2.1]octan-3-one (5b); and iso-propylamine when compared with the transaminase activity of the wild type transaminase having the sequence of SEQ ID NO:1.

8. The mutant transaminase of claim 7 , wherein the mutant transaminase has an at least 2-fold increased transaminase activity relative to the wild type enzyme having the amino acid sequence of SEQ ID NO:1.

9. A fusion protein comprising the transaminase of claim 1 .

10. A nucleic acid coding for the transaminase of claim 1 .

11. A host cell comprising the polynucleotide of claim 10 .

12. A method of producing an amine comprising reacting an amine acceptor with the mutant transaminase of claim 1 or the fusion protein of claim 9 in the presence of an amine donor.

13. The method of claim 12 wherein an enantiomerically enriched chiral amine is produced and the method is an asymmetric transamination of a prochiral ketone in the presence of an amine donor and the mutant transaminase or the fusion protein, wherein the mutant transaminase or the fusion protein is stereoselective.

14. The method of claim 12 wherein an enantiomerically enriched chiral amine is produced and the method is a kinetic resolution of a racemic amine in the presence of an amine acceptor and the mutant transaminase or the fusion protein.

15. The method of claim 14 , wherein the racemic amine has the formula

wherein
R 1 or R 2 independently of each other represent optionally substituted alkyl, aryl, carbocyclyl or heterocyclyl; or
R 1 and R 2 together with the carbon atom they are attached to form an optionally substituted mono- or poly-cyclic carbocyclic or heterocyclic ring.

16. The method of claim 14 wherein the amine acceptor is selected from ketones and keto carboxylic acids.

17. The method of claim 13 , wherein the prochiral ketone has the formula

wherein
R 3 or R 4 independently of each other represent optionally substituted alkyl, aryl, carbocyclyl or heterocyclyl or;
R 3 and R 4 together with the carbon atom they are attached to form an optionally substituted mono- or poly-cyclic carbocyclic or heterocyclic ring.

18. The method of claim 13 , wherein the amine donor is an achiral or chiral amine or amino acid.

19. The method of claim 15 wherein the amine acceptor is selected from ketones and keto carboxylic acids.

20. The method of claim 17 , wherein the amine donor is an achiral or chiral amine or amino acid.

Assignees

• Hoffmann La Roche
• Hoffmann La Roche

Inventors

• Hanlon Steven Paul
• Iding Hans
• Spurr Paul
• Wirz Beat
• Bornscheuer Uwe
• Pavlidis Ioannis
• Weiss Martin Steffen

Classifications

• C07K2319/00

  Fusion polypeptide · CPC title

• C07K2319/21

  containing a His-tag · CPC title

• C12N1/16

  Yeasts; Culture media therefor · CPC title

• C12N1/20

  Bacteria; Culture media therefor · CPC title

• C12Y206/01

  Transaminases (2.6.1) · CPC title